PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 348aa    MW: 39295.2 Da    PI: 7.0035
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031400.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.4e-114096155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e A  a++ a++k++g
  CCG031400.1 40 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAGHAYDLAALKYWG 96
                 57*******************99998898888888*****9999***********98 PP

2AP251.32.9e-16139190155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  CCG031400.1 139 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 190
                  89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-74096IPR001471AP2/ERF domain
CDDcd000187.24E-1540106No hitNo description
SuperFamilySSF541712.16E-1440106IPR016177DNA-binding domain
PROSITE profilePS5103218.16241104IPR001471AP2/ERF domain
SMARTSM003801.2E-1841110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-1241105IPR001471AP2/ERF domain
PRINTSPR003673.9E-64253IPR001471AP2/ERF domain
PfamPF008475.4E-12139190IPR001471AP2/ERF domain
CDDcd000182.61E-23139200No hitNo description
SuperFamilySSF541719.81E-18139200IPR016177DNA-binding domain
PROSITE profilePS5103218.334140198IPR001471AP2/ERF domain
SMARTSM003801.0E-24140204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17140199IPR001471AP2/ERF domain
PRINTSPR003673.9E-6180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGKTSKQSLK NSANTSINPT TKVKRTRKSV PRDSPTQRSS IYRGVTRHRW TGRYEAHLWD  60
KNCWNESQNK KGRQGAYDDE EAAGHAYDLA ALKYWGQDTI LNFPLSTYEE ELKEMEGNSK  120
EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAATA  180
YDMAAIEYRG LNAVTNFDLS RYVKWLRPDN QNNINNPQQN PNGDASIPIQ NLDQKLELDF  240
MSHQQSSNVN DTEVATTRPC GAGGSASSAL GLLLQSSKFK EMLERTSASD CPLTPPESDR  300
DPPRRSFPDD IQTYFDCQDS SSYTDGDDII FGDLHSFASP IFHCELDG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103840.0AC210384.1 Populus trichocarpa clone POP028-N07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020562.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-120AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLU5GNH00.0U5GNH0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s18350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.16e-93ARIA-interacting double AP2 domain protein